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changed docker container naming scheme - #2

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PelzKo merged 1 commit into
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container_update
Aug 5, 2026
Merged

changed docker container naming scheme#2
PelzKo merged 1 commit into
mainfrom
container_update

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@PelzKo

@PelzKo PelzKo commented Aug 5, 2026

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions

github-actions Bot commented Aug 5, 2026

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This PR is against the main branch ❌

  • Do not close this PR
  • Click Edit and change the base to dev
  • This CI test will remain failed until you push a new commit

Hi @PelzKo,

It looks like this pull-request is has been made against the daisybio/domainbenchmark main branch.
The main branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to main are only allowed if they come from the daisybio/domainbenchmark dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

@PelzKo
PelzKo merged commit 8b84aab into main Aug 5, 2026
5 of 13 checks passed
@PelzKo
PelzKo deleted the container_update branch August 5, 2026 10:58
@github-actions

github-actions Bot commented Aug 5, 2026

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nf-core pipelines lint overall result: Failed ❌

Posted for pipeline commit 4bfe16b

+| ✅ 194 tests passed       |+
#| ❔  20 tests were ignored |#
!| ❗   1 tests had warnings |!
-| ❌   4 tests failed       |-
Details

❌ Test failures:

❗ Test warnings:

❔ Tests ignored:

  • files_exist - File is ignored: conf/igenomes.config
  • files_exist - File is ignored: conf/igenomes_ignored.config
  • files_exist - File is ignored: CODE_OF_CONDUCT.md
  • files_exist - File is ignored: assets/nf-core-domainbenchmark_logo_light.png
  • files_exist - File is ignored: docs/images/nf-core-domainbenchmark_logo_light.png
  • files_exist - File is ignored: docs/images/nf-core-domainbenchmark_logo_dark.png
  • files_exist - File is ignored: .github/ISSUE_TEMPLATE/config.yml
  • files_exist - File is ignored: .github/workflows/awstest.yml
  • files_exist - File is ignored: .github/workflows/awsfulltest.yml
  • nextflow_config - Config variable ignored: manifest.name
  • nextflow_config - Config variable ignored: manifest.homePage
  • files_unchanged - File ignored due to lint config: CODE_OF_CONDUCT.md
  • files_unchanged - File ignored due to lint config: .github/ISSUE_TEMPLATE/bug_report.yml
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
  • files_unchanged - File ignored due to lint config: assets/email_template.txt
  • files_unchanged - File ignored due to lint config: assets/nf-core-domainbenchmark_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-domainbenchmark_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-domainbenchmark_logo_dark.png
  • files_unchanged - File ignored due to lint config: docs/README.md
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/domainbenchmark/domainbenchmark/.github/workflows/awstest.yml

✅ Tests passed:

Run details

  • nf-core/tools version 4.0.2
  • Run at 2026-08-05 11:00:16

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@PelzKo